Table 2 Sequencing data quality control
Sample | Raw reads | Valid reads | Valid ratio (%) | Q20% | Q30% | GC content (%) |
|---|---|---|---|---|---|---|
CPB2 + si_NC_1 | 55,604,212 | 52,016,636 | 93.55 | 99.92 | 97.51 | 51 |
CPB2 + si_NC_2 | 50,762,526 | 48,098,858 | 94.75 | 99.93 | 97.6 | 51.5 |
CPB2 + si_NC_3 | 52,014,736 | 49,328,396 | 94.84 | 99.94 | 97.67 | 51.5 |
CPB2 + si_S100A9_1 | 54,383,542 | 51,840,580 | 95.32 | 99.93 | 97.58 | 51.5 |
CPB2 + si_S100A9_2 | 55,132,804 | 52,306,692 | 94.87 | 99.92 | 97.54 | 51 |
CPB2 + si_S100A9_3 | 52,722,128 | 50,138,370 | 95.1 | 99.93 | 97.51 | 51 |