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Table 3 Differential transcript usage genes identified by both RNA-seq and Iso-Seq.

From: Long read isoform sequencing reveals hidden transcriptional complexity between cattle subspecies

Gene ID

Gene name/symbol

Description

Iso-seq Q-value

RNA-seq Q-value

ENSBIXG00005020385

MASP2

mannan binding lectin serine peptidase 2

8.78E-163

5.59E-08

ENSBIXG00005005332

NUSAP1

nucleolar and spindle associated protein 1

5.39E-112

6.30E-18

ENSBIXG00005022121

GRTP1

growth hormone regulated TBC protein 1

8.75E-35

2.52E-02

ENSBIXG00005009015

GAMT

guanidinoacetate N-methyltransferase

3.26E-25

1.86E-02

ENSBIXG00005007178

MCM10

minichromosome maintenance 10 replication initiation factor

8.05E-15

1.06E-07

ENSBIXG00005000548

PROC

protein C, inactivator of coagulation factors Va and VIIIa

2.34E-14

6.40E-23

ENSBIXG00005005056

IVD

isovaleryl-CoA dehydrogenase

1.10E-13

2.63E-02

ENSBIXG00005024440

KMO

kynurenine 3-monooxygenase

5.18E-12

5.87E-04

ENSBIXG00005023567

PIGW

phosphatidylinositol glycan anchor biosynthesis class W

1.29E-10

3.80E-02

ENSBIXG00005008286

AGTR1

angiotensin II receptor type 1

1.60E-10

3.43E-08

ENSBIXG00005016748

TTC3

tetratricopeptide repeat domain 3

1.03E-09

2.13E-04

ENSBIXG00005006900

FECH

ferrochelatase

4.13E-09

2.82E-04

ENSBIXG00005011852

PTGR1

 prostaglandin reductase 1

9.55E-09

4.68E-41

ENSBIXG00005004648

PSMC2

 proteasome 26S subunit, ATPase 2

5.31E-08

2.13E-02

ENSBIXG00005031552

CLK1

 CDC like kinase 1

8.38E-07

1.85E-05

ENSBIXG00005030508

PAM

 peptidylglycine alpha-amidating monooxygenase

1.13E-06

2.75E-02

ENSBIXG00005017614

FAM241B

Family with sequence similarity 241 member B

2.08E-05

9.85E-04

ENSBIXG00005010669

ALAD

 aminolevulinate dehydratase

4.47E-05

6.79E-06

ENSBIXG00005007376

C5H12orf75

chromosome 5 C12orf75 homolog

4.86E-05

4.40E-09

ENSBIXG00005003661

LOC113876353

very-long-chain 3-oxoacyl-CoA reductase-B-like

7.61E-04

1.83E-18

ENSBIXG00005020956

TPM1

tropomyosin 1

9.18E-04

6.40E-04

ENSBIXG00005003152

LIPC

lipase C, hepatic type

9.78E-04

5.33E-05

ENSBIXG00005030889

GHITM

growth hormone inducible transmembrane protein

0.00110707

3.05E-02

ENSBIXG00005020914

SEC31A

SEC31 homolog A, COPII coat complex component

0.00116596

0.016632608

ENSBIXG00005018018

CALM1

calmodulin 1

0.0012903

0.009381684

ENSBIXG00005030960

CAST

calpastatin

0.0039888

0.014115567

ENSBIXG00005009706

AVPI1

arginine vasopressin induced 1

0.00401675

0.021481672

ENSBIXG00005024769

ERG28

RNA-directed DNA polymerase

0.00592012

7.12E-06

ENSBIXG00005022063

AK4

adenylate kinase 4

0.01056799

2.85E-32

PB.36968

  

0.01114297

5.31E-06

ENSBIXG00005031540

ARG1

 arginase 1

0.0125591

3.58E-07

ENSBIXG00005010835

LOC113889558

vascular cell adhesion protein 1-like

0.02095845

1.49E-09

ENSBIXG00005029121

ACP5

acid phosphatase 5, tartrate resistant

0.02214711

0.025738332

ENSBIXG00005000161

EIF4B

eukaryotic translation initiation factor 4B

0.03090533

0.02907026

ENSBIXG00005008273

CMAS

cytidine monophosphate N-acetylneuraminic acid synthetase

0.03220453

0.010395561

ENSBIXG00005019414

RCL1

RNA terminal phosphate cyclase like 1

0.04492615

0.011265087