Table 5 Comparison of the ONT-based assemblies of the three Xoo and the two Xoc strains on the level of TALEs. Per assembly, we record the total number of TALE genes (#TALEs), the number of iTALEs with a truncated C-terminus (#iTALEs), the number of TALE pseudo genes (#pseudo genes), and the number of TALE classes (#classes)
From: Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing
Strain | #contigs | Contig N50 | Busco | #TALEs | #iTALEs | #pseudo genes | #classes | #new classes |
|---|---|---|---|---|---|---|---|---|
Xoo PXO35 | 3 | 4,989,458 | 94.6% | 20 | 1 | 0 | 19 | 1 |
Xoo FXO38 | 1 | 5,032,653 | 93.8% | 17 | 2 | 0 | 15 | 1 |
Xoo Huang604 | 1 | 4,947,629 | 95.1% | 16 | 1 | 0 | 17 | 0 |
Xoc BAI35 | 1 | 5,155,624 | 93.2% | 20 | 1 | 0 | 20 | 0 |
Xoc MAI23 | 1 | 5,042,222 | 96.0% | 20 | 1 | 1 | 20 | 0 |