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Table 4 Pseudomolecules characteristics for the haplotypes from both roots and leaves genomes

From: Chimeras in Merlot grapevine revealed by phased assembly

 

Merlot_leaf_CF

Merlot_leaf_MG

Merlot_root_CF

Merlot_root_MG

Length

(bp)

Contig number

Gene number

Length

(bp)

Contig number

Gene number

Length

(bp)

Contig number

Gene number

Length

(bp)

Contig number

Gene number

 

chr01

23,598,264

2

2091

25,285,196

3

2308

23,589,260

2

2090

25,812,159

3

2229

 

chr02

21,618,960

2

1711

20,834,059

2

1771

21,612,554

2

1710

20,815,648

2

1773

 

chr03

22,910,969

2

1896

23,738,413

3

1853

22,695,420

4

1900

22,863,606

2

1856

 

chr04

28,028,847

1

2171

28,067,391

1

2199

27,848,422

1

2172

28,047,555

1

2195

 

chr05

28,252,839

3

2354

27,194,848

4

2190

28,133,326

2

2359

27,245,740

5

2197

 

chr06

21,902,219

1

1997

25,066,429

2

1901

21,887,941

2

1999

25,064,422

2

1900

 

chr07

31,335,031

1

2892

30,285,517

2

2877

31,316,563

1

2889

30,272,463

2

2875

 

chr08

25,084,147

2

2260

25,133,383

2

2159

25,068,184

1

2264

25,106,757

2

2163

 

chr09

23,385,614

3

1774

25,283,510

3

1789

23,388,363

3

1772

25,079,599

3

1785

 

chr10

26,473,290

1

2156

25,356,578

3

2159

26,466,742

1

2159

25,373,432

3

2160

 

chr11

20,347,376

2

1571

20,416,243

1

1563

19,944,127

2

1572

20,402,067

1

1569

 

chr12

27,064,986

2

2447

24,119,349

4

2347

24,025,996

1

2400

24,096,300

3

2343

 

chr13

29,400,470

2

2277

29,181,387

2

2244

29,412,682

3

2277

29,182,803

3

2245

 

chr14

30,137,549

1

2577

31,130,771

2

2564

30,138,415

1

2570

31,044,170

1

2545

 

chr15

23,518,695

2

1552

23,434,760

2

1832

23,494,571

2

1545

23,422,104

2

1828

 

chr16

22,496,135

1

1813

22,861,382

3

1840

22,480,932

3

1815

22,716,031

2

1844

 

chr17

20,156,470

2

1552

20,678,794

5

1628

20,368,439

3

1554

20,784,459

4

1628

 

chr18

36,729,617

2

3197

37,876,454

1

3161

36,718,487

2

3192

37,875,940

1

3164

 

chr19

27,613,142

1

1978

25,782,670

2

1992

27,618,512

2

1979

25,770,078

2

1994

 

Total length

490,054,620

33

40,266

491,727,134

47

40,377

486,208,936

38

40,218

490,975,333

44

40,293

 

Total + UKN

499,510,259

  

499,510,259

  

500,119,474

  

503,747,540

   

chrUn

9,455,639

  

7,783,125

  

13,910,538

  

12,772,207

   

%chrUn in total length

1.90%

  

1.60%

  

2.80%

  

2.50%

   
  1. For each pseudo-molecule and per chromosome the data shows: the total length, the number of contig necessary to cover the entire chromosome and the number of genes detected. The total length of the pseudo-molecule is found bellow without or with (total + UKN) the unknown chromosome; it is compared with the size of the unknown chromosome (chrUn) which contains all contigs that were not confidently placed on a chromosome
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BMC Genomics

ISSN: 1471-2164

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