Skip to main content

Table 9 SNVs Chimeras found on Merlot-hap-MG

From: Chimeras in Merlot grapevine revealed by phased assembly

Cell Layer

Chr

Position

Merlot Leaf Hap MG

Merlot Root Hap MG

Merlot Leaf Hap CF

Merlot Root Hap CF

Cabernet

Magdeleine

Annotation of Merlot root hap MG

L1

chr02

3,007,441

A/G

26/7

A

33

A

24

A

27

A

24

A

32

No

L1

chr03

3,419,274

T/A

12/7

T

33

T

23

T

16

T

66

T

47

CDS

L1

chr04

27,055,780

A/T

18/7

A

27

A

22

A

35

A

64

A

38

Gene

L1

chr05

8,794,703

C/T

17/8

C

37

C

9

C

14

C

20

C

41

Gene

L1

chr05

8,797,586

C/A

23/9

C

31

C

8

C

3

C

19

C

27

Gene

L1

chr05

12,819,049

T/A

16/7

T

24

T

25

T

32

T

50

T

31

Gene

L1

chr05

18,874,107

C/T

22/10

C

23

C

24

C

26

C

47

C

52

Gene

L1

chr07

16,367,184

C/T

23/7

C

37

C

16

C

20

C

54

C

63

No

L1

chr08

13,911,900

C/A

16/9

C

33

C

15

C

22

C

44

C

63

CDS

L1

chr08

18,990,379

A/T

16/7

A

10

A

20

A

17

A

53

A

31

No

L1

chr09

2,285,675

G/T

23/7

G

34

G

22

G

24

G

61

G

51

No

L1

chr09

7,569,730

A/G

16/8

A

21

A

3

A

3

A

35

A

43

No

L1

chr09

11,451,290

G/A

20/8

G

30

G

28

G

23

G

30

G

32

No

L1

chr10

2,278,377

C/A

20/13

C

29

C

24

C

29

C

81

C

71

Gene

L1

chr10

5,337,832

A/G

16/10

A

24

A

11

A

12

A

44

A

48

CDS

L1

chr10

10,968,103

A/C

18/5

A

36

A

27

A

33

A

65

A

38

Gene

L1

chr10

22,333,673

T/A

18/6

T

28

T

28

T

14

T

85

T

63

Gene

L1

chr11

10,058,232

A/C

8/12

A

33

A

19

A

21

A

43

A

41

No

L1

chr11

10,357,099

T/C

15/5

T

27

T

16

T

13

T

42

T

49

No

L1

chr11

13,563,841

T/C

10/6

T

23

T

4

T

6

T

16

T

16

No

L1

chr11

13,732,865

T/C

21/4

T

33

T

16

T

27

T

61

T

68

CDS

L1

chr11

13,734,413

A/C

22/5

A

31

A

20

A

27

A

64

A

69

Gene

L1

chr13

15,741,877

A/T

14/7

A

18

A

27

A

24

A

86

A

74

No

L1

chr13

18,415,015

A/G

17/9

A

24

A

3

A

4

A

25

A

27

Gene

L1

chr13

22,993,757

T/A

16/14

T

33

T

31

T

37

T

53

T

56

No

L1

chr13

24,830,909

A/T

18/10

A

20

A

19

A

32

A

65

A

43

Gene

L1

chr14

5,457,647

T/A

22/6

T

19

T

3

T

6

T

17

T

28

No

L1

chr14

30,136,904

A/G

13/9

A

30

A

9

A

14

A

60

A

54

No

L1

chr15

2,385,711

C/T

10/6

C

16

C

2

C

2

C

26

C

21

No

L1

chr16

6,369,473

C/T

20/6

C

24

C

6

C

7

C

24

C

21

No

L1

chr16

15,506,287

C/T

22/7

C

29

C

14

C

22

C

62

C

27

No

L1

chr16

17,466,134

C/T

24/8

C

28

C

16

C

17

C

45

C

67

No

L1

chr17

7,800,769

G/A

13/5

G

22

G

20

G

14

G

49

G

21

CDS

L1

chr17

16,802,779

C/T

26/9

C

37

C

35

C

33

C

76

C

50

No

L1

chr17

20,480,355

C/T

10/4

C

32

C

25

C

28

C

49

C

39

CDS

L2

chr03

17,695,770

G/A

23/7

G

24

A

22

A

18

A

44

A

66

Gene

L2

chr05

1,753,844

T/C

10/8

T

24

C

17

C

11

C

55

C

43

No

L2

chr05

5,349,008

A/G

19/9

A

23

G

28

G

35

G

63

G

75

Gene

L2

chr07

20,018,317

G/A

23/7

G

25

A

31

A

27

A

64

A

66

No

L2

chr08

5,971,148

A/G

20/10

A

30

G

26

G

17

G

71

G

56

Gene

L2

chr08

8,665,113

A/C

18/6

A

26

C

32

C

28

C

36

C

51

No

L2

chr08

10,405,377

C/T

17/4

C

27

T

28

T

30

T

71

T

77

No

L2

chr08

16,511,687

A/G

23/5

A

37

G

23

G

20

G

50

G

60

No

L2

chr08

18,095,503

C/T

24/8

C

33

T

26

T

17

T

60

T

52

No

L2

chr10

3,422,488

G/T

17/5

G

30

T

31

T

23

T

28

T

98

No

L2

chr11

1,451,292

C/T

22/8

C

32

T

32

T

43

T

80

T

63

No

L2

chr12

7,859,048

A/C

22/11

A

19

C

24

C

30

C

66

C

58

Gene

L2

chr12

14,034,710

T/G

15/8

T

16

G

13

G

25

G

50

G

24

No

L2

chr13

25,521,690

A/G

25/7

A

26

G

24

G

29

G

58

G

51

Gene

L2

chr14

16,511,432

T/A

10/8

T

21

A

22

A

22

A

42

A

51

No

L2

chr15

20,391,775

T/G

20/5

T

30

G

37

G

31

G

76

G

50

CDS

L2

chr17

17,822,477

C/T

20/7

C

25

T

12

T

19

T

47

T

62

No

  1. For each chimera, the cell layer is identified, the chromosome and the exact location is given according to the reference Merlot-root-Hap-MG pseudo molecule. Then for each sample the allele(s) are completed by the number of reads confirming the nucleotide. If there is only one nucleotide, all reads of this haplotype converge, when two alleles are found the number of reads supporting each one is respectively given by the corresponding numbers. For the first position (chr 02, position 1 351 259), 15 reads have G nucleotide and 6 have T. In the last column the position is either included in a coding region inside a gene (CDS), included in a gene but not in a coding region (gene) or not included in either (No).
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us