The terpene synthase gene family in maize – a clarification of existing community nomenclature

Köllner, Tobias G.; Gershenzon, Jonathan; Peters, Reuben J.; Zerbe, Philipp; Schmelz, Eric A.

doi:10.1186/s12864-023-09856-7

BMC Genomics

Table 1 Current existing nomenclature of the terpene synthase gene family in maize. The first column contains the names already assigned to functionally characterized maize TPS genes in the literature (for citations see last column). To fill the remaining gaps in the TPS numbering and to unify the nomenclature, we propose the names listed in the second column, mainly following the original names or the names already given in Ding et al. [4] (third column). Please note that this table also includes obvious pseudogenes, because it has been shown that a pseudogene in one maize line can be functional in another line [3, 5, 6]

From: The terpene synthase gene family in maize – a clarification of existing community nomenclature

Name in the primary literature	Name proposed in this study	Ding et al. [4]	Sun et al. [7]	B73 reference GRAMENE 4.0	B73 reference NAM 5.0	Gene identifier (other maize lines)	Literature
tps2	ZmTPS2	tps2	ZmTPS15	Zm00001d015053	Zm00001eb230410		[9]
tps3	ZmTPS3	tps3		Zm00001d015054	Zm00001eb230440		[9]
tps4	ZmTPS4	tps4		Zm00001d024478	Zm00001eb415080		[5]
tps5	ZmTPS5	tps5		Zm00001d024481	Zm00001eb415090		[5]
tps6/Zx1	ZmTPS6/Zx1	tps6	ZmTPS21	Zm00001d024207	Zm00001eb412960		[10]
tps7	ZmTPS7	tps7	ZmTPS4	Zm00001d032230	Zm00001eb041770		[11]
ZmTPS8	ZmTPS8	tps8	ZmTPS2	Zm00001d029195	Zm00001eb017120		[12]
	ZmTPS9	tps9	ZmTPS24	Zm00001d024477	Zm00001eb415070
tps10	ZmTPS10	tps10		Zm00001d024486	Zm00001eb415160		[13]
tps11/Zx3	ZmTPS11/Zx3	tps11		Zm00001d024210	Zm00001eb412960		[10]
TPS12/Zx2	ZmTPS12/Zx2	tps12		Zm00001d024208	Zm00001eb412960		[4]
TPS13/Zx4	ZmTPS13/Zx4	tps13		Zm00001d024211	Zm00001eb412990		[4]
	ZmTPS14		ZmTPS9	Zm00001d004484	Zm00001eb089110
tps15	ZmTPS15	tps15	ZmTPS16	Zm00001d035682	Zm00001eb267020		[14]
	ZmTPS16		ZmTPS26	Zm00001d024667	Zm00001eb416710
ZmEDS	ZmTPS17/ZmEDS	tps17	ZmTPS10	Zm00001d004509	Zm00001eb089360		[15]
	ZmTPS18	tps18	ZmTPS8	Zm00001d004279	Zm00001eb087570
tps19/stc1	ZmTPS19/STC1	tps19/stc1	ZmTPS19	Zm00001d045054	Zm00001eb374210		[16]
tps20	ZmTPS20			Zm00001d024669	Zm00001eb416720		[14]
tps21	ZmTPS21	tps21	ZmTPS20	Zm00001d047440	Zm00001eb394330		[17]
tps22	ZmTPS22	tps22	ZmTPS23	Zm00001d024359	Zm00001eb414190		[14]
tps23	ZmTPS23	tps23	ZmTPS22	Zm00001d024234	Zm00001eb413120		[6]
	ZmTPS24		ZmTPS14	Zm00001d053916	Zm00001eb208380
	ZmTPS25			Zm00001d053918	Zm00001eb208400
tps26	ZmTPS26	tps26	ZmTPS17	Zm00001d037092	Zm00001eb278400		[16]
ZmTPS27	ZmTPS27	tps30	ZmTPS1	Zm00001d029139	Zm00001eb016730		[12]
	ZmTPS28		ZmTPS18	Zm00001d018611	Zm00001eb298110
	ZmTPS29		ZmTPS27	Zm00001d029523	Zm00031ab020550
	ZmTPS30			Zm00001d024479	Zm00001eb415090
	ZmTPS31			Zm00001d024480	Zm00001eb415100
	ZmTPS32		ZmTPS29			Zm00038ab090090
	ZmTPS33		ZmTPS30			Zm00038ab090300
	ZmTPS34		ZmTPS31			Zm00026ab417460
	ZmTPS35		ZmTPS28			Zm00034ab064260
	ZmTPS36			Zm00001d000337
an1/ZmCPS1	ZmTPS37/CPS1/AN1	an1/cps1	ZmTPS6	Zm00001d032961	Zm00001eb048020		[18]
an2/ZmCPS2	ZmTPS38/CPS2/AN2	an2/cps2	ZmTPS3	Zm00001d029648	Zm00001eb021200		[19]
ZmCPS3	ZmTPS39/CPS3	cps3		Zm00001d024512	Zm00001eb415420		[20]
ZmCPS4	ZmTPS40/CPS4	cps4	ZmTPS12	Zm00001d048874	Zm00001eb167120		[20]
	ZmTPS41/CPS5			Zm00001d048867
ZmKSL1	ZmTPS42/KSL1	ksl1	ZmTPS13	Zm00001d049957	Zm00001eb176190
ZmKSL2	ZmTPS43/KSL2	ksl2	ZmTPS11	Zm00001d041082	Zm00001eb133200		[21]
d5/ZmKSL3	ZmTPS44/KS(L3)/D5	ksl3	ZmTPS7	Zm00001d002349	Zm00001eb071070		[22]
ZmKSL4	ZmTPS45/KSL4	ksl4	ZmTPS5	Zm00001d032858	Zm00001eb047160		[23]
ZmKSL5	ZmTPS46/KSL5	ksl5		Zm00001d002350	Zm00001eb071080		[22]
	ZmTPS47/KSL6	ksl6	ZmTPS25	Zm00001d024514	Zm00001eb415430
tps1	ZmTPS1/KSL7	tps1		Zm00001d002351	Zm00001eb071090		[8, 22]

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ISSN: 1471-2164

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