Table 1 GT molecular variant calling
From: Chronic shedding of a SARS-CoV-2 Alpha variant in wastewater
Location code | Sample date | VOC (%)a | Lineage(s) (%)b |
|---|---|---|---|
VM | 9-21-21 | Delta (98.4) | AY.25.1 (84.8) |
VM | 10-26-21 | Alpha (94.2) | Q.3 (94.2) |
VM | 11-9-21 | Alpha (94.9) | Q.4 (94.7) |
VM | 3-14-22 | Omicron (93.8) | XBB.2.3.11 (74.3) |
VM | 4-25-22 | Omicron (95.1) | XBB.1.5.81 (17.7) XBB.1.16.1 (17.5) XBB.1.5.10 (15.0) EG.5 (7.7) XBB.1.5.72 (7.4) GJ.1.2 (5.9) FD.1.1 (5.1) |
VM | 9-12-22 | Alpha (97.3) | Q.4 (96.9) |
VM | 3-13-23 | Alpha (98.0) | Q.4 (65.5) |
VM | 3-27-23 | Omicron (27.1) | Q.4 (47.1) |
Alpha (47.1) | B.1.1.28 (16.2) | ||
XBB.1.5.49 (7.9) | |||
VM | 4-24-23 | Alpha (97.9) | Q.4 (89.7) |
VM | 5-1-23 | Alpha (97.4) | Q.4 (97.1) |
VM | 5-15-23 | Alpha (96.6) | Q.4 (93.8) |
C6 | 1-2-22 | Omicron (89.9) | BA.1.1 (82.5) |
Delta (7.6) | B.1.617.2 (7.3) | ||
CA | 6-6-22 | Omicron (99.8) | BG.5 (99.8) |
MP | 2-20-23 | Omicron (98.4) | XBB.1.5 (45.1) |
CL | 2-28-23 | Omicron (99.1) | DT.2 (49.9) |
BQ.1.1 (16.1) | |||
BQ.1.1.37 (16.1) | |||
BQ.1.1.52 (16.1) | |||
UT | 4-3-23 | Omicron (86.5) | XBB.1.5 (19.6) |
Delta (7.4) | XBB.1.5.23 (15.9) | ||
XBB.1.28 (15.6) | |||
XBB.1.5.1 (8.2) | |||
XBB.1.5.17 (7.5) | |||
CE | 4-10-23 | Alpha (89.0) | Q.4 (88.8) |