Table 5 Identified Important Biomarkers
Dataset | Omics type | important biomarkers | |
|---|---|---|---|
BRCA | mRNA expression | LIN28B|389421,TFF1|7031,CYP2B7P1|1556,FABP7|2173,TLX3|30012,SOX10|6663,ANKRD30A|91074,KRT6B|3854,CA9|768,CXorf61|203413,AGR3|155465,MIA|8190,GABRP|2568,GP2|2813,C1orf64|149563,SBSN|374897,KLK7|5650,PTPRZ1|5803,SFRP1|6422,KLK6|5653,ABCC11|85320,KLK8|11202,MSLN|10232,ZBTB16|7704,A2ML1|144568,TUBA3E|112714,SLC6A14|11254,C2orf40|84417,KRT16|3868,VGLL1|51442,C6orf218|221718,ZIC1|7545,CA6|765,HORMAD1|84072,TRIML2|205860,UPF0639|400224,TRIM15|89870,ISL2|64843,MAPK4|5596,ART3|419,RAET1L|154064,PSAPL1|768239 | |
DNA methylation | MIR124-2,SAMSN1,OR1J4,MIR563,FLJ41856,ZSWIM2,TAS2R13,LOC100130331,C5orf39,LOC145837,SLC5A12,SIRPD,MEP1A,POU4F1,FCGR2B,MIR100,SERPINB12,ARHGAP28,SCGB3A1,POU3F3,BLID,OR4N5,OR11G2,SLC22A2,DOK5,ZP4,CRISP2,LOC285692,KCNJ16,C14orf72,PSAT1,MT1DP,MIR365-1,TNFSF13B,INA,OR11H6,TAL2,DEFB118,S100A7,TMEFF1 | ||
microRNA expression | hsa-mir-934,hsa-mir-449a,hsa-mir-577,hsa-mir-135b,hsa-mir-184,hsa-mir-190b,hsa-mir-187,hsa-mir-1269,hsa-mir-449b,hsa-mir-2115,hsa-mir-519a-1,hsa-mir-105-2,hsa-mir-105-1,hsa-mir-767,hsa-mir-205,hsa-mir-9-3,hsa-mir-375,hsa-mir-224,hsa-mir-210,hsa-mir-1251,hsa-mir-196a-1,hsa-mir-9-2,hsa-mir-486,hsa-mir-516a-2,hsa-mir-206,hsa-mir-196a-2,hsa-mir-4326,hsa-mir-135a-1,hsa-mir-452,hsa-mir-522,hsa-mir-137,hsa-mir-1304,hsa-mir-935,hsa-mir-937,hsa-mir-374c | ||
ROSMAP | mRNA expression | FRMPD2P1 ,LINC01007,CTB-171A8.1,TAC3,S100A4,LINC00507,SLC5A11,RP11-552D4.1,LINC00499,RP11-298D21.1,DDIT4,BX255923.3,PHYHD1,APLN,ANLN ,RBP4,TGFBR3L,HSPA2,TF ,PNMA5,CXCR4,GAREML,CTD-2380F24.1,SCN3B,FAM65C,RP11-321E2.3 ,TRIP10,KCNJ10,RP11-416I2.1,UGT8 | |
DNA methylation | LDHC,SLC44A2,TRIP10 ,EMC4,CCL3,ENG,SLC44A2,ATG10,AGMAT,CCDC8,LRRC39,CMTM5,IRF7,ACSM5,LECT1,GFM1,HCAR1,EML2,TRAPPC12,SRRM2-AS1,HRC ,AHSP,C10orf11,EFS,XAF1,ECEL1,FBXL22,ARHGEF4,PTGER1,CDH1 | ||
microRNA expression | hsa-miR-1246,hsa-miR-1299,hsa-miR-200a,ebv-miR-BART8,hsa-miR-520e,hsa-miR-1275,hsv1-miR-H8,hsa-miR-2117,hsa-miR-199a-5p,hsa-miR-330-3p,hsa-miR-1260,hsa-miR-744,hsa-miR-891b,hsa-miR-1308,hsa-miR-522,hsv1-miR-H3,hsa-miR-2114,hsa-miR-133b,hsa-miR-27a,hsa-miR-509-3p,mcv-miR-M1-5p,hsa-miR-153,hsv1-miR-H1,hsa-miR-208a,hsa-miR-1248,hsa-miR-639,hsa-miR-518e,hsa-miR-194,hsa-miR-199b-5p,hsa-miR-381 | ||