Sample ID | Raw Base (bp) | Clean Base (bp) | Effective Rate (%) | Error Rate (%) | Q20 (%) | Q30 (%) | GC Rate (%) | Mapped (%) | Coverage Rate (%) | Mean Depth |
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Thin-pool | 173,104,773,300 | 172,337,628,000 | 99.56 | 0.04 | 95.19 | 88.15 | 36.61 | 99.74 | 98.82 | 83.03× |
Thick-pool | 168,069,016,500 | 167,308,148,700 | 99.55 | 0.03 | 95.94 | 89.66 | 36.86 | 99.76 | 98.91 | 85.32× |
WH8 | 28,116,614,100 | 27,991,626,600 | 99.56 | 0.03 | 95.5 | 88.75 | 36.51 | 99.65 | 98.25 | 42.52× |
YY18 | 30,575,037,300 | 30,427,013,700 | 99.52 | 0.04 | 95.4 | 88.59 | 36.37 | 99.8 | 98.62 | 43.66× |
- Sample ID, name of sample; Raw Base (bp), number of original bases; Clean Base (bp), number of filtered bases; Effective Rate (%), proportion of the raw bases that were clean bases; Error Rate (%), proportion of all bases that were incorrect; Q20 (%), proportion of all bases with a Phred value greater than 20; Q30 (%), proportion of all bases with a Phred value greater than 20; GC Rate (%), proportion of all bases that were C or G; Mapped (%), proportion of the clean bases that were mapped to the reference genome; Coverage Rate (%), proportion of the genome covered by the bases; Mean Depth, average sequencing depth