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Table 1 Ovar-DRB1 gene frequencies estimated for Sudan Desert Sheep breeds. Abrag (AB; n = 37), Ashgar (AS; n = 44), Buze´e (B; n = 23), Hamari (H; n = 72), Kabashi (K, n = 45), and Watish (W; n = 38)

From: Exploring genetic diversity and variation of Ovar-DRB1 gene in Sudan Desert Sheep using targeted next-generation sequencing

Ovar-DRB1 Alleles

AB

AS

B

H

K

W

Ovar-DRB1*01:01

2,70

4,55

 

1,39

 

2,63

Ovar-DRB1*01:04

5,41

6,82

6,52

0,69

4,44

3,95

Ovar-DRB1*01:05

1,35

1,14

2,17

2,08

3,33

1,32

Ovar-DRB1*02:01

  

4,35

2,78

3,33

 

Ovar-DRB1*03:03

1,35

 

10,87

4,17

6,67

1,32

Ovar-DRB1*03:07

 

2,27

10,87

3,47

2,22

1,32

Ovar-DRB1*03:08

1,35

    

1,32

Ovar-DRB1*03:11

 

3,41

 

1,39

  

Ovar-DRB1*04:01

1,35

1,14

  

6,67

3,95

Ovar-DRB1*04:02

9,46

5,68

10,87

13,19

10,00

15,79

Ovar-DRB1*05:01

1,35

2,27

2,17

 

2,22

 

Ovar-DRB1*05:03

9,46

1,14

 

2,08

1,11

6,58

Ovar-DRB1*06:03

10,81

18,18

6,52

7,64

12,22

10,53

Ovar-DRB1*07:02

   

0,69

  

Ovar-DRB1*08:01

   

2,08

1,11

 

Ovar-DRB1*08:02

2,70

  

0,69

  

Ovar-DRB1*08:03

1,35

3,41

 

1,39

2,22

1,32

Ovar-DRB1*08:04

 

1,14

 

0,69

  

Ovar-DRB1*09:02

1,35

  

0,69

3,33

5,26

Ovar-DRB1*10:01

13,51

27,27

6,52

17,36

17,78

7,89

Ovar-DRB1*10:04

2,70

   

1,11

 

Ovar-DRB1*10:06

1,35

  

0,69

1,11

 

Ovar-DRB1*10:08

1,35

 

2,17

   

Ovar-DRB1*12:02

5,41

 

6,52

2,08

 

6,58

Ovar-DRB1*13:01

     

2,63

Ovar-DRB1*13:02

8,11

7,95

6,52

6,94

2,22

11,84

Ovar-DRB1*13:03

6,76

1,14

6,52

4,86

1,11

9,21

Ovar-DRB1*14:02

1,35

 

8,70

0,69

1,11

2,63

Ovar-DRB1*14:03

    

1,11

 

Ovar-DRB1*16:01

4,05

3,41

2,17

2,78

1,11

1,32

Ovar-DRB1*16:05

2,70

  

0,69

  

Ovar-DRB1*16:06

   

0,69

  

Ovar-DRB1*16:07

   

0,69

1,11

 

Ovar-DRB1*16:08

  

4,35

 

1,11

 

Ovar-DRB1*17:02

  

2,17

   

Ovar-DRB1*18:02

    

2,22

 

Ovar-DRB1*18:03

 

1,14

  

2,22

 

Ovar-DRB1*19:01

   

0,69

  

Ovar-DRB1*20:02

   

3,47

 

1,32

Ovar-DRB1*20:03

   

2,08

2,22

 

Ovar-DRB1*21:01

   

0,69

  

Ovar-DRB1*24:01

 

1,14

 

0,69

 

1,32

Ovar-DRB1*Sudan1

2,70

4,55

 

9,03

5,56

 

Ovar-DRB1*Sudan2

 

1,14

    

Ovar-DRB1*Sudan3

 

1,14

    

Ovar-DRB1*Sudan4

   

0,69

  
  1. N = number of animals analysed; frequent alleles in each ecotype are indicated in bold (> 5%); and novel alleles identified in this study are indicated in bold and underlined
  2. Ovar-DRB1 alleles were named following the recommended IPD-MHC nomenclature (species and locus designation* allelic family: coding change within the allelic family; IPD-MHC Database (ebi.ac.uk))