Fig. 3

Vibrio campbellii pangenome. The radial layers present genomes ordered according to their phylogenetic relationship based on maximum likelihood phylogenetic tree constructed from single copy orthologous genes. ANIb values are shown as heatmap with high similarity in red and lower similarity in gray color. The dark and light color of bars in radial layers show presence and absence, respectively, of 9318 gene clusters. Gene clusters (GCs) are organized based on their distribution across genomes using Euclidean distance and Ward ordination (gene tree in the center of pangenome). The “Core” collection corresponds to GCs containing genes from all genomes. The “Accessory Group 1” and “Accessory Group 2” refers to genes characteristic to Group 1 and Group 2. The “Unique” collection refers to genes unique for the new assembled genome in this study (BF5_0283 and Mt009_b1). Collections are marked in the outermost radial layer. Colored squares below the ANIb value heatmap provide additional data for each isolate