Transcriptomic analysis of intestinal organoids, derived from pigs divergent in feed efficiency, and their response to Escherichia coli

Table 2 Number of observed differentially expressed genes (# DEG) for low FE and high FE colon organoids as a response to the E. coli challenge

Pathway	Low FE Colon		High FE Colon
Pathway	# DEG	FDR^a	# DEG	FDR^a
TNF signaling pathway (102)^a	30	7.24E⁻²⁴	25	2.44E⁻¹⁷
IL17 signaling pathway (84)^a	19	5.39E⁻¹³	17	1.30E⁻¹⁰
NF-kappa B signaling pathway (92)^a	22	1.74E⁻¹⁴	19	4.73E⁻¹¹
NOD-like receptor signaling pathway (138)^a	22	2.09E⁻¹⁰	16	5.52E⁻⁰⁶

^aNumber between brackets is the number of total genes for each pathway and FDR False Discovery Rate. Pathways with indication of DEGs are shown in Additional files 7, 8, 9 and 10

ISSN: 1471-2164