Table 1 Summary of HPV integration sites identified using targeted-capture NGS data
Sample | Breakpoint in HPV | Integrated Position | Region | Gene |
|---|---|---|---|---|
SiHa | HPV16: 3134 | chr13: 74,087,562 | intergenic | KLF5, LINC00392 |
HPV16: 3384 | chr13:73,788,866 | intergenic | KLF5, LINC00392 | |
HeLa | HPV18: 5734 | chr8:128,230,629 | ncRNA_intronic | CCAT1 |
HPV18: 2498 | chr8:128,241,546 | intergenic | CCAT1, CASC21 | |
HPV18: 7858 | chr8:128,234,255 | intergenic | CCAT1, CASC21 | |
HPV18: 3101 | chr8:128,233,367 | intergenic | CCAT1, CASC21 |