Solanum aculeatissimum and Solanum torvum chloroplast genome sequences: a comparative analysis with other Solanum chloroplast genomes

Zhang, Longhao; Yi, Chengqi; Xia, Xin; Jiang, Zheng; Du, Lihui; Yang, Shixin; Yang, Xu

doi:10.1186/s12864-024-10190-9

Table 1 Sample information and summary of 31 chloroplast genome characteristics of solanum species

From: Solanum aculeatissimum and Solanum torvum chloroplast genome sequences: a comparative analysis with other Solanum chloroplast genomes

Species	Plastome		LSC		IR		SSC		Number of all genes	Number of CDS genes	Number of tRNA genes	Number of rRNA genes	Data sources
Species	Size (bp)	GC (%)	Size (bp)	GC (%)	Size (bp)	GC (%)	Size (bp)	GC (%)	Number of all genes	Number of CDS genes	Number of tRNA genes	Number of rRNA genes	Data sources
S.acaule	155,570	37.84	86,020	35.95	25,593	43.09	18,364	32.08	132	87	37	8	MK036506
S.aculeatissimum	155,820	37.77	86,466	35.9	25,419	43.09	18,494	31.9	128	84	36	8	OR381845
S.aethiopicum	155,606	37.7	86,164	35.78	25,440	43.06	18,563	31.95	132	90	34	8	MN218076
S.anguivi	155,753	37.66	86,261	35.75	25,442	43.02	18,609	31.88	132	90	34	8	MN218088
S.berthaultii	155,533	37.88	85,975	36.01	25,593	43.1	18,372	32.1	132	91	33	8	KY419708
S.brevicaule	155,531	37.87	85,981	35.99	25,599	43.08	18,354	32.12	132	91	33	8	MK036507
S.bulbocastanum	155,371	37.88	85,785	36.02	25,588	43.08	18,381	32.13	134	89	37	8	DQ347958
S.campylacanthum	155,017	37.72	86,667	35.87	25,422	43.06	18,506	31.91	134	90	36	8	NC_039609.1
S.cardiophyllum	155,570	37.9	85,983	36.04	25,596	43.08	18,395	32.18	132	87	37	8	MK690622
S.chacoense	155,532	37.89	85,972	36.02	25,592	43.09	18,376	32.15	132	87	37	8	MF471371
S.commersonii	155,525	37.88	86,013	36	25,573	43.12	18,366	32.09	133	86	39	8	NC028069
S.dasyphyllum	155,716	37.63	86,314	35.68	25,433	43.03	18,536	31.89	132	87	37	8	MH283716
S.demissum	155,558	37.87	85,999	36	25,593	43.1	18,373	32.1	132	87	37	8	MK036508
S.hougasii	155,549	37.87	85,990	36	25,593	43.1	18,373	32.09	132	87	37	8	MF471372
S.incanum	155,657	37.7	86,276	35.78	25,421	43.06	18,539	31.91	134	90	36	8	NC039605
S.lichtensteinii	155,574	37.71	86,217	35.79	25,421	43.06	18,515	31.93	134	90	36	8	NC_039598.1
S.linnaeanum	155,574	37.7	86,219	35.78	25,423	43.06	18,509	31.93	134	90	36	8	NC_039600.1
S.lycopersicum	155,461	37.86	85,876	35.99	25,611	43.09	18,363	32.04	134	89	37	8	NC_007898.3
S.macrocarpon	156,004	37.61	86,542	35.65	25,462	43.01	18,538	31.92	132	86	38	8	MN218081.1
S.melongenaon	155,581	37.71	86,194	35.8	25,443	43.05	18,501	31.95	132	86	38	8	MN218080
S.peruvianum	155,561	37.84	85,906	35.98	25,639	43.06	18,377	32.02	128	83	37	8	KP117026
S.pimpinellifolium	155,442	37.88	85,856	36.01	25,612	43.09	18,364	32.08	128	83	37	8	NC026882
S.polhillii	155,422	37.67	86,044	35.72	25,417	43.08	18,546	31.9	134	90	36	8	NC_039414.1
S.rostratum	155,559	37.76	86,281	35.87	25,418	43.07	18,442	31.91	130	85	37	8	NC_057245.1
S.sisymbriifolium	155,771	37.76	86,404	35.85	25,421	43.08	18,527	32.06	132	86	38	8	MN218090
S.supinum	155,769	37.68	86,362	35.74	25,429	43.06	18,549	32	134	90	36	8	NC_039601.1
S.torvum	154,942	37.81	85,646	35.92	25,430	43.08	18,436	32.04	130	85	37	8	OR381846
S.tuberosum	155,296	37.88	85,737	36.01	25,593	43.1	18,375	32.09	133	88	37	8	NC_008096.2
S.umtuma	155,541	37.7	86,173	35.79	25,427	43.04	18,514	31.94	134	90	36	8	NC_039413.1
S.verrucosum	155,479	37.88	85,876	36	25,593	43.1	18,347	32.1	130	85	37	8	NC_041632.1
S.wrightii	155,506	37.68	86,231	35.77	25,423	43.07	18,429	31.78	132	86	38	8	MN218084

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com

BMC Genomics

Contact us