Table 2 Genomic statistics of related fungi used for comparison in this study
Accession | Lifestyle | Host | Disease | Genome Size | GC Content | Repeat Content | Encoded proteins | CAZymes | Percent CAZymes of total genes | Secreted proteins | Percent secreted proteins of total | Predicted Effectors | Percent Effectors of total | Biosynthetic Gene Clusters | Publication | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Anisogramma anomala OR1 | BioProject PRJNA966177 | Obligate Biotroph | Hazelnut | Eastern Filbert Blight | 342.5 Mb | 34.46% | 89.40% | 9179 | 456 | 4.97 | 762 | 8.30 | 165 | 1.80 | 25 | Current Study |
Blumeria graminis f. sp. Tritici | GCA_905067625.1 | Obligate Biotroph | Wheat | Powdery mildew | 141.4 Mb | 43.50% | 75–90% | 7,993 | 132 | 1.65 | 970 | 12.14 | 437 | 5.47 | 9 | Wicker et al. 2013 [32] |
Erysiphe neolycopersici | GCA_003610855.1 | Obligate biotroph | Tomato | Powdery mildew | 42 Mb | 38% | 39.40% | 6851 | 135 | 1.97 | 499 | 7.28 | 175 | 2.55 | 3 | Wu et al. 2018 [33] |
Erysiphe pulchra | GCA_002918395.1 | Obligate biotroph | Dogwood | Powdery mildew | 63.5 Mb | 38.50% | NA | 6859 | 83 | 1.21 | 341 | 4.97 | 70 | 1.02 | 7 | Wadl et al. 2019 [34] |
Golovinomyces orontii | Golovinomyces orontii MGH1 v4.0 | Obligate Biotroph | Wide range | Powdery mildew | 211.35 Mb | 42% | 74.50% | 12,649 | 668 | 5.28 | 157 (transcripts) | 1.24 | 70 (transcripts) | 0.55 | 24 | JGI Project # 1,056,001; Micali et al. 2008 [35] |
Melampsora larici populina | GCF_000204055.1 | Obligate Biotroph | Poplar | Poplar leaf rust | 101.1 Mb | 41% | 44.91% | 16,257 | 308 | 1.89 | 1,796 | 11.05 | 1,184 (SSPs) 819 | 5.04 | 7 | Duplessis et al. 2011 [36] |
Parauncinula polyspora | PRJEB29715 (ENA) | Obligate biotroph | Asian Oak | Powdery mildew | 28.0 Mb | 46.50% | 8.50% | 6046 | 104 | 1.72 | 261 | 4.32 | 70 | 1.16 | 8 | Frantzeskakis et al. 2019 [37] |
Puccinia graminis tritici | GCF_000149925.1 | Obligate Biotroph | Wheat/cereals | Stem rust | 88.6 Mb | 43.30% | 43.77% | 15,979 | 203 | 1.27 | 1,386 | 8.67 | 1106 (SSPs) | 6.92 | 2a | Broad Institute ASM14992v1 |
Ustilago maydis | GCF_000328475.2 | Obligate Biotroph | Maize/cereals | Corn smut | 19.7 Mb | 54% | 1.10% | 6780 | 139 | 2.05 | 426 | 6.28 | 203 | 2.99 | 13 | Kamper et al. 2006 [38] |
Taphrina deformans | GCA_000312925.2 | Biotroph | Peach/almond | Peach leaf curl | 13.4 Mb | 49.50% | 1.50% | 4663 | 231 | 4.95 | 256 | 5.49 | 24 | 0.51 | 4 | Cisse et al. 2013 [39] |
Fusarium graminearum | GCF_000240135.3 | Hemibiotroph | Wheat/barley/maize | Fusarium head blight/ ear rot of corn | 36.5 Mb | 48% | 0% | 13,313 | 487 | 3.66 | 1442 | 10.83 | 190 | 1.43 | 67 | |
Colletotrichum graminicola | GCF_000149035.1 | Hemibiotroph | maize/cereals | Anthracnose leaf blight | 51.6 Mb | 49% | 22.30% | 12,019 | 572 | 4.76 | 1650 | 13.73 | 314 | 2.61 | 42 | O'Connell et al. 2012 [42] |
Pyricularia grisea | GCF_004355905.1 | Hemibiotroph | Rice | Rice blast | 44.6 Mb | 47.50% | 12.61% | 12,452 | 539 | 4.33 | 1491 | 11.97 | 490 | 3.94 | 45 | Gomez Luciano et al. 2019 [43] |
Pyricularia oryzae | GCF_000002495.2 | Hemibiotroph | Rice | Rice blast | 41 Mb | 51.50% | 11.86% | 12,989 | 538 | 4.14 | 752 | 5.79 | 370 | 2.85 | 30 | Dean et al. 2005 [44] |
Verticillium dahliae | GCA_000150675.2 | Hemibiotroph | Wide range | Verticillium wilt | 33.8 Mb | 55.50% | 5.00% | 10,535 | 418 | 3.97 | 739 | 7.01 | 127 | 1.21 | 25 | Klosterman et al. 2011 [45] |
Botrytis cinerea | GCF_000143535.2 | Necrotroph | wide range | Gray mold | 42.6 Mb | 41.50% | 1% | 11,698 | 1155 | 9.87 | 879 | 7.51 | 130 | 1.11 | 24a | |
Cryphonectria parasitica | GCF_011745365.1 | Necrotroph | Chestnut | Chestnut blight | 43.9 Mb | 50.80% | 12.10% | 11,606 | 548 | 4.72 | 397 | 3.42 | 32 | 0.28 | 46 | Crouch et al. 2020 [48] |
Diaporthe helianthi | GCA_001702395.2 | Necrotroph | Sunflower | Stem canker | 63.7 Mb | 43.50% | NA | 13,139 | 516 | 3.93 | 1475 | 11.23 | 245 | 1.86 | 67 | Baroncelli et al. 2016 [49] |
Sclerotinia sclerotiorum | GCA_001857865.1 | Necrotroph | Wide range | White mold | 38.9 Mb | 41.50% | 12.96% | 11,130 | 411 | 3.69 | 603 | 5.42 | 57 | 0.51 | 15 | Derbyshire et al. 2017 [50] |
Valsa mali | GCA_000818155.1 | Necrotroph | Apple | Apple canker | 44.7 Mb | 49% | 14.10% | 11,284 | 342 | 3.03 | 779 | 6.90 | 193 | 1.71 | 85 | Yin et al. 2015 [51] |
Nectria cocca | GCF_000151355.1 | Saprotroph | Wide range | Root rot | 51.3 Mb | 50.50% | 5.10% | 15,708 | 889 | 5.66 | 1379 | 8.78 | 257 | 1.64 | 38 | Coleman et al. 2009 [52] |
Podospora anserina | GCF_000226545.1 | Saprotroph | Non-phytopathic | NA | 34.7 Mb | 52% | 5% | 10,518 | 243 | 2.31 | 267 | 2.54 | 1064 | 10.12 | 31 | Espagne et al. 2008 [52] |
Stachybotrys chartarum | GCA_000730325.1 | Saprotroph | Non-phytopathic | NA | 36.9 Mb | 53% | 1.01% | 11,530 | 383 | 3.32 | 1206 | 10.46 | 144 | 1.25 | 55 | Semeiks et al. 2014 [53] |
Neurospora crassa | GCA_000182925.2 | Free-living | Non-phytopathic | NA | 41 Mb | 48% | 10% | 10,812 | 191 | 1.77 | 891 | 8.24 | 167 | 1.54 | 12 | Galagan et al. 2003 [54] |
Chaetomium globosum | GCF_000143365.1 | Free-living | Non-phytopathic | NA | 34.3 Mb | 56% | 6% | 11,040 | 146 | 1.32 | 1094 | 9.91 | 177 | 1.60 | 45 | Cuomo et al. 2015 [55] |