Table 2 Quantitative measurements per pipeline for the small dataset
Pipeline | Mean gene per cell | Median gene per cell | Mean umi per cell | Median umi per cell | N cells |
|---|---|---|---|---|---|
alevin-fry | 2249.9 | 1659 | 8645.5 | 4031.9 | 178 |
LR-splitpipe | 1772.5 | 1179.5 | 4177.9 | 1849.5 | 100 |
split-pipeline | 3602.7 | 2815.5 | 16159.1 | 8307.5 | 108 |
splitseq-demultiplex | 1730.8 | 647 | 97746.3 | 9387 | 255 |
STARsolo | 1755.8 | 1171 | 4045.3 | 1778 | 100 |
zUMI | 2723.1 | 2233 | 8741.6 | 5137 | 140 |