Genome-wide QTL and eQTL mapping reveal genes associated with growth rate trait of the Pacific white shrimp (Litopenaeus vannamei)

Table 1 Genes with cis-eQTLs overlapping with QTL intervals

Gene ID	NR annotation	QTL ID	Linkage group	Location of the Linkage group	Pearson’s R	p-value
2329_0\|path2	40 S ribosomal protein S5	QTL2	LG16	144.63	0.248**	0
5952_686\|path0	Protein SMG7	QTL4	LG27	151.19	0.212**	0
c10972/f3p0/1885	Metalloreductase STEAP4-like	QTL7	LG30	116.74	0.379**	0
545_0\|path20	Nascent polypeptide-associated complex alpha	QTL11	LG43	12.432	0.218**	0
c10043/f1p0/1004	Probable small nuclear ribonucleoprotein	QTL6	LG30	96.502	−0.129*	0.035
c15091/f1p2/1469	Hypothetical protein X975_01914, partial	QTL9	LG39	121.69	−0.089	0.147
5952_5224\|path0	Glutaryl-CoA dehydrogenase, mitochondrial	QTL10	LG40	194.27	−0.496**	0

Note: Pearson’s correlation values were used to evaluate the correlation between gene expression levels and shrimp body weight. **: correlation is statistically significant at the 0.01 level (two-tailed t-test)

ISSN: 1471-2164